ATCATCTGTGTATTTGAATCAAGTGTTCATTACAAACTGATGGGGATTAAAGGAGGAAAAAGGAAAATAATTTCTGCAAAATGTCGAATAATACCCAAAA[AA/AT]
ATATATATAGTAGAAACCATTTCATTCCCCAAAATTAACCAACAATGTATAACGCATGTCCAATTCCAATCGATGGATCCTCTGTTTCTAGTTTATCTTG
CAAGATAAACTAGAAACAGAGGATCCATCGATTGGAATTGGACATGCGTTATACATTGTTGGTTAATTTTGGGGAATGAAATGGTTTCTACTATATATAT[TT/AT]
TTTTGGGTATTATTCGACATTTTGCAGAAATTATTTTCCTTTTTCCTCCTTTAATCCCCATCAGTTTGTAATGAACACTTGATTCAAATACACAGATGAT
| Populations | Population Size | Frequency of AT(primary allele) | Frequency of AA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 55.20% | 40.00% | 8.01% | 0.00% | NA |
| All Indica | 492 | 84.10% | 8.40% | 8.13% | 0.00% | NA |
| All Japonica | 244 | 3.10% | 91.00% | 6.15% | 0.00% | NA |
| Aus | 7 | 14.30% | 85.70% | 0.00% | 0.00% | NA |
| Indica I | 492 | 84.10% | 8.40% | 8.13% | 0.00% | NA |
| Indica II | 215 | 86.00% | 8.40% | 6.05% | 0.00% | NA |
| Indica III | 21 | 90.50% | 5.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 80.00% | 10.10% | 11.05% | 0.00% | NA |
| Temperate Japonica | 189 | 2.80% | 91.50% | 5.82% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 91.70% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 11.10% | 84.20% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 68.80% | 21.30% | 12.55% | 0.00% | NA |