Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


ACATAAAAAAACAGCTAATAAGCAGCACAAATTGAGTATTCAGGAATCGGTCTGTCTCTATACTCTGTCGAAGCATTATTATACAGTATACTATAAAAAA[T/A]
TTGCCGACAGAATTGCATTAATTCACTTGAAACAAAAAGAAAACAATTGATCGCAATCTTGCATCTAATGCAATCACTTTCTGAAGTACTAATCCATTTT

Reverse complement sequence

AAAATGGATTAGTACTTCAGAAAGTGATTGCATTAGATGCAAGATTGCGATCAATTGTTTTCTTTTTGTTTCAAGTGAATTAATGCAATTCTGTCGGCAA[A/T]
TTTTTTATAGTATACTGTATAATAATGCTTCGACAGAGTATAGAGACAGACCGATTCCTGAATACTCAATTTGTGCTGCTTATTAGCTGTTTTTTTATGT

Allele Frequencies:

Populations Population SizeFrequency of T(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.30% 3.10% 0.65% 0.00% NA
All Indica  492 100.00% 0.00% 0.00% 0.00% NA
All Japonica  244 91.80% 7.10% 1.23% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 100.00% 0.00% 0.00% 0.00% NA
Indica II  215 100.00% 0.00% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 100.00% 0.00% 0.00% 0.00% NA
Temperate Japonica  189 99.50% 0.00% 0.53% 0.00% NA
Tropical Japonica  36 0.00% 47.20% 5.56% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 37.50% 55.60% 11.11% 0.00% NA
Intermediate  231 98.70% 0.90% 0.43% 0.00% NA