Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GGCCAATTCTCTGCCTAAATTAAATCTGGGGCAAATTCTGCATGCCACCGGCCTGGATGAACAGCTTGAGCCAGAAGTCGTCCATGTCGTCGTCGTTGCT[CGACG/CGACA]
ACGGCGAGGCACCGCCCGCGCCGAGAGGATCGCCGCCGCTCATCTCCATCCCGGAGTCGGTGCTGTCCACCGTCATTGCCAGCGTCTCCGACCAGAAGCT

Reverse complement sequence

AGCTTCTGGTCGGAGACGCTGGCAATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGT[CGTCG/TGTCG]
AGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATTTAATTTAGGCAGAGAATTGGCC

Allele Frequencies:

Populations Population SizeFrequency of CGACG(primary allele) Frequency of CGACA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.20% 0.50% 1.29% 0.00% NA
All Indica  492 97.80% 0.80% 1.42% 0.00% NA
All Japonica  244 98.80% 0.00% 1.23% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 97.80% 0.80% 1.42% 0.00% NA
Indica II  215 96.70% 1.90% 1.40% 0.00% NA
Indica III  21 95.20% 0.00% 4.76% 0.00% NA
Indica Intermediate  190 97.90% 0.00% 2.11% 0.00% NA
Temperate Japonica  189 98.40% 0.00% 1.59% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.30% 0.00% 1.73% 0.00% NA