CTTTTTTTTTTTTCCGTCGCTTCTTCGCGCCGCCTCCCCTCGACGCCGGCGCCGCCGCTCTCGTGAGCCACCGCCACCGCCGGCGCCGCCGCTCTCGTGA[G/GCCACCG]
CCACCGCCACCGCCGGCGCCGCCGAGCCTCCTCCTCCGGCAAGACGTCTCATCCAGGCCTCTCCCTCCCCCTCAGACGCCGCCTCTGCGCCTCCATTCTC
GAGAATGGAGGCGCAGAGGCGGCGTCTGAGGGGGAGGGAGAGGCCTGGATGAGACGTCTTGCCGGAGGAGGAGGCTCGGCGGCGCCGGCGGTGGCGGTGG[C/CGGTGGC]
TCACGAGAGCGGCGGCGCCGGCGGTGGCGGTGGCTCACGAGAGCGGCGGCGCCGGCGTCGAGGGGAGGCGGCGCGAAGAAGCGACGGAAAAAAAAAAAAG
| Populations | Population Size | Frequency of G(primary allele) | Frequency of GCCACCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 94.80% | 0.80% | 4.39% | 0.00% | NA |
| All Indica | 492 | 94.10% | 1.10% | 4.88% | 0.00% | NA |
| All Japonica | 244 | 96.70% | 0.00% | 3.28% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 94.10% | 1.10% | 4.88% | 0.00% | NA |
| Indica II | 215 | 94.00% | 1.00% | 5.12% | 0.00% | NA |
| Indica III | 21 | 85.70% | 5.30% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 92.60% | 1.70% | 5.79% | 0.00% | NA |
| Temperate Japonica | 189 | 96.80% | 0.00% | 3.17% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 93.10% | 1.40% | 5.63% | 0.00% | NA |