GCTGCTTAAGCATATCTATTTCCTGTCATTACAAGATGGACAAGTTAATAAACCAAAACAGGATGTAGTCAGAGACAGGTTGGAAAAGTGTTTGTGTTAC[AATAAAAATAAATTG/AATAAAAAATAAATTT]
TTCAAAATGACACACAGCCTATCAATTGTATAGGGCAATCAAATGACCTGATTCAATTGCCTAAGGCGTTCCTTTGAATGTGAATCGTCCAAAAAAACCT
AGGTTTTTTTGGACGATTCACATTCAAAGGAACGCCTTAGGCAATTGAATCAGGTCATTTGATTGCCCTATACAATTGATAGGCTGTGTGTCATTTTGAA[CAATTTATTTTTATT/AAATTTATTTTTTATT]
GTAACACAAACACTTTTCCAACCTGTCTCTGACTACATCCTGTTTTGGTTTATTAACTTGTCCATCTTGTAATGACAGGAAATAGATATGCTTAAGCAGC
| Populations | Population Size | Frequency of AATAAAAATAAATTG(primary allele) | Frequency of AATAAAAAATAAATTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 45.30% | 49.20% | 10.72% | 0.00% | NA |
| All Indica | 492 | 27.00% | 65.40% | 10.37% | 0.00% | NA |
| All Japonica | 244 | 84.80% | 5.50% | 10.25% | 0.00% | NA |
| Aus | 7 | 42.90% | 25.00% | 42.86% | 0.00% | NA |
| Indica I | 492 | 27.00% | 65.40% | 10.37% | 0.00% | NA |
| Indica II | 215 | 34.70% | 59.50% | 8.84% | 0.00% | NA |
| Indica III | 21 | 44.40% | 47.60% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 24.90% | 66.80% | 11.05% | 0.00% | NA |
| Temperate Japonica | 189 | 86.20% | 4.10% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 91.70% | 0.00% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 57.90% | 31.20% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 32.50% | 59.30% | 12.12% | 0.00% | NA |