AAGCCATATATAGTTACAAATGATCTGTCAACAAAAAACATATGCGACTCCCTCTCTATCTTGTGTCAGATATCAACACATATCATCTACAACAACTCTG[CAGATCAGATCAGA/CAGATCAGATCAGATCAGA]
CGGCCTAGAATCTCTTTTGAGGAGCCATGCTACAAGAAACTCTGCAGGTCAGAAGGCCTAGAATCTCTTTGGAGAGCCATATGGGCTTGGAGGTCTCGGC
GCCGAGACCTCCAAGCCCATATGGCTCTCCAAAGAGATTCTAGGCCTTCTGACCTGCAGAGTTTCTTGTAGCATGGCTCCTCAAAAGAGATTCTAGGCCG[TCTGATCTGATCTG/TCTGATCTGATCTGATCTG]
CAGAGTTGTTGTAGATGATATGTGTTGATATCTGACACAAGATAGAGAGGGAGTCGCATATGTTTTTTGTTGACAGATCATTTGTAACTATATATGGCTT
| Populations | Population Size | Frequency of CAGATCAGATCAGATCAGA(primary allele) | Frequency of CAGATCAGATCAGA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 63.70% | 32.40% | 5.81% | 0.00% | NA |
| All Indica | 492 | 94.10% | 1.10% | 4.88% | 0.00% | NA |
| All Japonica | 244 | 6.20% | 86.90% | 7.38% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 94.10% | 1.10% | 4.88% | 0.00% | NA |
| Indica II | 215 | 94.40% | 1.00% | 4.65% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 93.20% | 1.70% | 5.26% | 0.00% | NA |
| Temperate Japonica | 189 | 4.60% | 88.40% | 7.41% | 0.00% | NA |
| Tropical Japonica | 36 | 3.00% | 88.90% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 27.80% | 68.40% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 83.10% | 11.90% | 5.63% | 0.00% | NA |