CCCGGCGTCCGGAACCAGACCCCCCGAGCAAAACGGCGGAGCAGAGTAGAGCCGCCGCCGCCGCCGCCCGCCCGAATCGACACCCGCGACCCACAGATCG[GGCGGCGGCGGGA/GCCGGCGGCGGGA]
CCCCAGACCGCCAGATCTGAGCCCCGGCACACCCAACAACGCACGAGATGGAGACGGAGGCATCGGATCAGGGGGGAGCGGCTCACCTCACCTCAGCTCA
TGAGCTGAGGTGAGGTGAGCCGCTCCCCCCTGATCCGATGCCTCCGTCTCCATCTCGTGCGTTGTTGGGTGTGCCGGGGCTCAGATCTGGCGGTCTGGGG[TCCCGCCGCCGCC/TCCCGCCGCCGGC]
CGATCTGTGGGTCGCGGGTGTCGATTCGGGCGGGCGGCGGCGGCGGCGGCTCTACTCTGCTCCGCCGTTTTGCTCGGGGGGTCTGGTTCCGGACGCCGGG
| Populations | Population Size | Frequency of GGCGGCGGCGGGA(primary allele) | Frequency of GCCGGCGGCGGGA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 91.50% | 0.40% | 8.14% | 0.00% | NA |
| All Indica | 492 | 93.10% | 0.40% | 6.50% | 0.00% | NA |
| All Japonica | 244 | 89.30% | 0.00% | 10.66% | 0.00% | NA |
| Aus | 7 | 71.40% | 0.00% | 28.57% | 0.00% | NA |
| Indica I | 492 | 93.10% | 0.40% | 6.50% | 0.00% | NA |
| Indica II | 215 | 96.30% | 0.00% | 3.72% | 0.00% | NA |
| Indica III | 21 | 90.50% | 0.00% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 89.50% | 1.20% | 9.47% | 0.00% | NA |
| Temperate Japonica | 189 | 89.90% | 0.00% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 83.30% | 0.00% | 16.67% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 89.60% | 1.00% | 9.52% | 0.00% | NA |