GATAGAACCAGCTTAGCCAAAGCCAAATTTAGTATGCCTGGGCTAACCTATCGTACCAACCCACAAATTTTCTCCTATCTGAAAATGAATTACGATAGAT[A/AC]
CCCCCCACCCTAAACAAGAAGCAGCTAACTATCATCAATCAGATATTCATTCAGGAGGAACGTAAGTGGTCAGCACGTATCACGCTCTTATCCTACACTG
CAGTGTAGGATAAGAGCGTGATACGTGCTGACCACTTACGTTCCTCCTGAATGAATATCTGATTGATGATAGTTAGCTGCTTCTTGTTTAGGGTGGGGGG[T/GT]
ATCTATCGTAATTCATTTTCAGATAGGAGAAAATTTGTGGGTTGGTACGATAGGTTAGCCCAGGCATACTAAATTTGGCTTTGGCTAAGCTGGTTCTATC
| Populations | Population Size | Frequency of A(primary allele) | Frequency of AC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 95.60% | 3.10% | 1.29% | 0.00% | NA |
| All Indica | 492 | 94.70% | 3.90% | 1.42% | 0.00% | NA |
| All Japonica | 244 | 99.60% | 0.00% | 0.41% | 0.00% | NA |
| Aus | 7 | 33.30% | 57.10% | 14.29% | 0.00% | NA |
| Indica I | 492 | 94.70% | 3.90% | 1.42% | 0.00% | NA |
| Indica II | 215 | 96.70% | 2.30% | 0.93% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 92.60% | 5.40% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 93.10% | 4.90% | 2.16% | 0.00% | NA |