GTGTTTGTTGTGGGCTGTCCATCCACAGTGCTGATCCTTCTAGAGTATTCCATCTCAACAGTCACCTGGAAATAGGAAGGAGAAAAAATCAATAAATTTT[C/T]
AACAAAGGTAACAACTTGTTATGGAACTTCTGATGGAATATCTCAAAACCTATGTACATACTTGCTTGCCAATCAACCTTGTGCGCAAGAATTCCTTGGC
GCCAAGGAATTCTTGCGCACAAGGTTGATTGGCAAGCAAGTATGTACATAGGTTTTGAGATATTCCATCAGAAGTTCCATAACAAGTTGTTACCTTTGTT[G/A]
AAAATTTATTGATTTTTTCTCCTTCCTATTTCCAGGTGACTGTTGAGATGGAATACTCTAGAAGGATCAGCACTGTGGATGGACAGCCCACAACAAACAC
| Populations | Population Size | Frequency of C(primary allele) | Frequency of T(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 96.10% | 2.70% | 1.16% | 0.00% | NA |
| All Indica | 492 | 95.10% | 3.90% | 1.02% | 0.00% | NA |
| All Japonica | 244 | 98.40% | 0.40% | 1.23% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 95.10% | 3.90% | 1.02% | 0.00% | NA |
| Indica II | 215 | 96.30% | 3.30% | 0.47% | 0.00% | NA |
| Indica III | 21 | 81.00% | 19.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 91.60% | 6.50% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 98.90% | 0.00% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 2.90% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 93.10% | 5.30% | 1.73% | 0.00% | NA |