Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CACCAATTACAAACTGGAATTATTAAGATGAAGAGAATTAAGATAGATACCTTATGTTTGTACCCAGCATTGTGCTGTTTACGGACAGATGGCTGCAGCA[TT/TTT]
TTTTTTAGAATAAGTTAACAGACATATCAACTATACAAAAAAACTATATATCTAGAACAGAATGCACCACAGAGGCACATATAATTACAAAAGAATTGGA

Reverse complement sequence

TCCAATTCTTTTGTAATTATATGTGCCTCTGTGGTGCATTCTGTTCTAGATATATAGTTTTTTTGTATAGTTGATATGTCTGTTAACTTATTCTAAAAAA[AA/AAA]
TGCTGCAGCCATCTGTCCGTAAACAGCACAATGCTGGGTACAAACATAAGGTATCTATCTTAATTCTCTTCATCTTAATAATTCCAGTTTGTAATTGGTG

Allele Frequencies:

Populations Population SizeFrequency of TT(primary allele) Frequency of TTT(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 74.90% 9.80% 16.93% 0.00% NA
All Indica  492 64.20% 15.50% 23.98% 0.00% NA
All Japonica  244 96.30% 0.80% 2.87% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 64.20% 15.50% 23.98% 0.00% NA
Indica II  215 58.10% 20.90% 26.51% 0.00% NA
Indica III  21 81.00% 10.50% 9.52% 0.00% NA
Indica Intermediate  190 65.80% 13.80% 23.68% 0.00% NA
Temperate Japonica  189 95.20% 1.10% 3.70% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 68.00% 12.80% 22.08% 0.00% NA