AAGAAAAAAACAAAAAAAAGAAAAAGAAGCCCACAGATCAAACGGGTCACCCACAAACTCAAGGGGGGGGGTGGAATCAGGCAGGGGGAGCAAGAGGGCA[AACCCTAACCCT/AACCCTAACCC]
GGTCGCGGCGGCGGCGGAGGCCGAGGCGGCGGTGGCGGAGGAGGCGTGCGGGGATTGGAATCGCGAGCTCGGTGCGCGTGGTGGCGTCTCCTCTCTCTCT
AGAGAGAGAGGAGACGCCACCACGCGCACCGAGCTCGCGATTCCAATCCCCGCACGCCTCCTCCGCCACCGCCGCCTCGGCCTCCGCCGCCGCCGCGACC[AGGGTTAGGGTT/GGGTTAGGGTT]
TGCCCTCTTGCTCCCCCTGCCTGATTCCACCCCCCCCCTTGAGTTTGTGGGTGACCCGTTTGATCTGTGGGCTTCTTTTTCTTTTTTTTGTTTTTTTCTT
| Populations | Population Size | Frequency of AACCCTAACCCT(primary allele) | Frequency of AACCCTAACCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 51.00% | 44.40% | 8.14% | 0.00% | NA |
| All Indica | 492 | 33.30% | 60.80% | 8.94% | 0.00% | NA |
| All Japonica | 244 | 89.80% | 4.40% | 6.15% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 33.30% | 60.80% | 8.94% | 0.00% | NA |
| Indica II | 215 | 41.10% | 54.00% | 8.37% | 0.00% | NA |
| Indica III | 21 | 42.10% | 52.40% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 35.30% | 57.90% | 10.53% | 0.00% | NA |
| Temperate Japonica | 189 | 88.90% | 4.50% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 10.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 43.10% | 51.50% | 9.52% | 0.00% | NA |