CGCTCAGGTCCAAGATCCGTATATACTTTGACCCAGAGAATGCCTTTCGGGGAAGTTGCGATCCAATGCACTCCCTAAAATGAATGGTTCTAACCTTGCT[T/G]
GGTAGATCTTTGAAAAACTTGGGTTGCTTCTGGTAGTTGACCAACTGTGCATGTCGGCAATAACGCTTATTATTAGCTTTGCTCCATGTATTTGGCATGG
CCATGCCAAATACATGGAGCAAAGCTAATAATAAGCGTTATTGCCGACATGCACAGTTGGTCAACTACCAGAAGCAACCCAAGTTTTTCAAAGATCTACC[A/C]
AGCAAGGTTAGAACCATTCATTTTAGGGAGTGCATTGGATCGCAACTTCCCCGAAAGGCATTCTCTGGGTCAAAGTATATACGGATCTTGGACCTGAGCG
| Populations | Population Size | Frequency of T(primary allele) | Frequency of G(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 88.90% | 7.50% | 3.88% | 0.00% | NA |
| All Indica | 492 | 84.60% | 10.90% | 5.08% | 0.00% | NA |
| All Japonica | 244 | 97.50% | 1.20% | 1.23% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 84.60% | 10.90% | 5.08% | 0.00% | NA |
| Indica II | 215 | 96.30% | 1.40% | 2.33% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 84.70% | 13.00% | 2.63% | 0.00% | NA |
| Temperate Japonica | 189 | 97.40% | 1.60% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 66.70% | 14.30% | 22.22% | 0.00% | NA |
| Intermediate | 231 | 86.60% | 11.10% | 2.60% | 0.00% | NA |