Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


ATCAGTTGACGAATGGAGGATGGCAACGCCATACTAACAGGGATAGATTGCCCTTCAGACGAACATCCGCTCAGGTCCAAGATCCGTATATACTTTGACC[C/CTTG]
AGAGAATGCCTTTCGGGGAAGTTGCGATCCAATGCACTCCCTAAAATGAATGGTTCTAACCTTGCTTGGTAGATCTTTGAAAAACTTGGGTTGCTTCTGG

Reverse complement sequence

CCAGAAGCAACCCAAGTTTTTCAAAGATCTACCAAGCAAGGTTAGAACCATTCATTTTAGGGAGTGCATTGGATCGCAACTTCCCCGAAAGGCATTCTCT[G/CAAG]
GGTCAAAGTATATACGGATCTTGGACCTGAGCGGATGTTCGTCTGAAGGGCAATCTATCCCTGTTAGTATGGCGTTGCCATCCTCCATTCGTCAACTGAT

Allele Frequencies:

Populations Population SizeFrequency of C(primary allele) Frequency of CTTG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 88.90% 8.40% 2.97% 0.00% NA
All Indica  492 84.60% 11.70% 4.27% 0.00% NA
All Japonica  244 98.00% 2.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 84.60% 11.70% 4.27% 0.00% NA
Indica II  215 96.70% 1.90% 1.40% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 84.20% 11.10% 5.26% 0.00% NA
Temperate Japonica  189 97.40% 2.60% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 55.60% 37.50% 11.11% 0.00% NA
Intermediate  231 86.60% 9.10% 4.76% 0.00% NA