TTCCTGAAATAACATCAAGCAGCGTGAGGCTAGCCATGTCGCTGATACTATCTGGCATGTCTCGCAGACTATAACAACAAGTAAGGTTCAAGACTTGAAG[T/C]
TGAAGGTCACCAAACAAAGACGGAAGATGTTCAATCCTTATACAATATGACAAATTGAGATGCTTCAACTTAAATATGTTGCATAATGATTGGGGTAATG
CATTACCCCAATCATTATGCAACATATTTAAGTTGAAGCATCTCAATTTGTCATATTGTATAAGGATTGAACATCTTCCGTCTTTGTTTGGTGACCTTCA[A/G]
CTTCAAGTCTTGAACCTTACTTGTTGTTATAGTCTGCGAGACATGCCAGATAGTATCAGCGACATGGCTAGCCTCACGCTGCTTGATGTTATTTCAGGAA
| Populations | Population Size | Frequency of T(primary allele) | Frequency of C(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 86.30% | 8.50% | 5.68% | 0.00% | NA |
| All Indica | 492 | 80.50% | 12.60% | 7.93% | 0.00% | NA |
| All Japonica | 244 | 98.00% | 1.20% | 0.82% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 80.50% | 12.60% | 7.93% | 0.00% | NA |
| Indica II | 215 | 93.50% | 1.50% | 5.12% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 80.00% | 15.10% | 5.79% | 0.00% | NA |
| Temperate Japonica | 189 | 97.40% | 1.60% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 16.70% | 33.33% | 0.00% | NA |
| Intermediate | 231 | 83.10% | 12.70% | 4.76% | 0.00% | NA |