TTGGTCCTGACCTTGGTCGTTGTAGGAGAGGATGCTGCTCACGTCGGACGGCGTCGGCGGACAGCGGCATCAGATTGTACGGCCCACTCCCGAAGAAGGA[CACGCCACGCC/CACGCC]
GGACGTGGCGCCTGTGACGGCGAACTGCCGCTTGAGCGACAGCTTCGAGTACCACGGCCGAGGCCAGAGGACGCCCCTGACGGAGCTTCCAGCCTCTGAT
ATCAGAGGCTGGAAGCTCCGTCAGGGGCGTCCTCTGGCCTCGGCCGTGGTACTCGAAGCTGTCGCTCAAGCGGCAGTTCGCCGTCACAGGCGCCACGTCC[GGCGTGGCGTG/GGCGTG]
TCCTTCTTCGGGAGTGGGCCGTACAATCTGATGCCGCTGTCCGCCGACGCCGTCCGACGTGAGCAGCATCCTCTCCTACAACGACCAAGGTCAGGACCAA
| Populations | Population Size | Frequency of CACGCC(primary allele) | Frequency of CACGCCACGCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 54.10% | 38.70% | 11.63% | 0.00% | NA |
| All Indica | 492 | 79.90% | 6.90% | 14.23% | 0.00% | NA |
| All Japonica | 244 | 2.20% | 92.20% | 5.74% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 79.90% | 6.90% | 14.23% | 0.00% | NA |
| Indica II | 215 | 93.00% | 2.90% | 4.19% | 0.00% | NA |
| Indica III | 21 | 90.50% | 9.50% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 73.20% | 12.60% | 16.32% | 0.00% | NA |
| Temperate Japonica | 189 | 0.00% | 94.20% | 5.82% | 0.00% | NA |
| Tropical Japonica | 36 | 15.20% | 77.80% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 16.70% | 33.33% | 0.00% | NA |
| Intermediate | 231 | 64.10% | 24.90% | 14.72% | 0.00% | NA |