AAGTTGCCAAAATTTTAGCAACTATGCCACCAAAATTTGATAAGGTTTTTTTTGGCATCAAAATAAACAGGCCCTTATTTTGCCTGTATATATAGACCAT[AGTAGAGTA/AGTAGAGTG]
GACAGTGATACTACTTATTAATTACTGGTAGATTATTTGCATCAAAATATGATTTTTCCAACAACTTTATATACGTAGACCACTTATTTTAAGCTATTTG
CAAATAGCTTAAAATAAGTGGTCTACGTATATAAAGTTGTTGGAAAAATCATATTTTGATGCAAATAATCTACCAGTAATTAATAAGTAGTATCACTGTC[TACTCTACT/CACTCTACT]
ATGGTCTATATATACAGGCAAAATAAGGGCCTGTTTATTTTGATGCCAAAAAAAACCTTATCAAATTTTGGTGGCATAGTTGCTAAAATTTTGGCAACTT
| Populations | Population Size | Frequency of AGTAGAGTG(primary allele) | Frequency of AGTAGAGTA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 61.20% | 32.40% | 9.43% | 0.00% | NA |
| All Indica | 492 | 90.90% | 1.80% | 7.52% | 0.00% | NA |
| All Japonica | 244 | 5.10% | 83.20% | 12.30% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 90.90% | 1.80% | 7.52% | 0.00% | NA |
| Indica II | 215 | 90.70% | 1.50% | 7.91% | 0.00% | NA |
| Indica III | 21 | 90.50% | 5.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 88.40% | 2.90% | 8.95% | 0.00% | NA |
| Temperate Japonica | 189 | 4.10% | 86.20% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 7.10% | 72.20% | 22.22% | 0.00% | NA |
| Japonica Intermediate | 19 | 12.50% | 73.70% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 12.50% | 77.80% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 77.50% | 13.50% | 10.39% | 0.00% | NA |