TTCTACCGCGGCCGCGCGCCGTCGGGAACCAAGACCGCGTGGAAGATGAACGAGTACAGAGCATTCCACTACCCCGACGCCTCCTCCGCCTCCGCCTCCA[G/GCGCCGG]
CGCCGGCGCCGCCGCGCCACCAAACCATCTTCCTCCGCAGGTGATTAATCAATACCTAAGTACACGTTGCTTTCTTTGCCGTTGCACATACTAGCCGCAT
ATGCGGCTAGTATGTGCAACGGCAAAGAAAGCAACGTGTACTTAGGTATTGATTAATCACCTGCGGAGGAAGATGGTTTGGTGGCGCGGCGGCGCCGGCG[C/CCGGCGC]
TGGAGGCGGAGGCGGAGGAGGCGTCGGGGTAGTGGAATGCTCTGTACTCGTTCATCTTCCACGCGGTCTTGGTTCCCGACGGCGCGCGGCCGCGGTAGAA
| Populations | Population Size | Frequency of G(primary allele) | Frequency of GCGCCGG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 95.10% | 2.60% | 2.33% | 0.00% | NA |
| All Indica | 492 | 93.90% | 3.30% | 2.85% | 0.00% | NA |
| All Japonica | 244 | 98.40% | 0.00% | 1.64% | 0.00% | NA |
| Aus | 7 | 42.90% | 57.10% | 0.00% | 0.00% | NA |
| Indica I | 492 | 93.90% | 3.30% | 2.85% | 0.00% | NA |
| Indica II | 215 | 96.30% | 2.40% | 1.40% | 0.00% | NA |
| Indica III | 21 | 76.20% | 20.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 91.60% | 4.90% | 3.68% | 0.00% | NA |
| Temperate Japonica | 189 | 98.90% | 0.00% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 92.60% | 4.00% | 3.46% | 0.00% | NA |