GACAAATTAATTAGATTTAATAAATTCGTCCCGCAGTTTACAGGCGGAATCTATAATTTATTTTATTATTAATCTACGTTTAATATGTGTTCATATACTT[AAA/AA,AAAA]
AAAAAATTAGCCAATCAACTAAACACACCCTTTTTCCTAACCGCAGTTGGTGGGAAACGGTTTGAACTTCCAACTGTGCCACTGTTGTCCATCCCATTTT
AAAATGGGATGGACAACAGTGGCACAGTTGGAAGTTCAAACCGTTTCCCACCAACTGCGGTTAGGAAAAAGGGTGTGTTTAGTTGATTGGCTAATTTTTT[TTT/TT,TTTT]
AAGTATATGAACACATATTAAACGTAGATTAATAATAAAATAAATTATAGATTCCGCCTGTAAACTGCGGGACGAATTTATTAAATCTAATTAATTTGTC
| Populations | Population Size | Frequency of AAA(primary allele) | Frequency of AAAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 91.60% | 1.20% | 5.68% | 0.00% | NA |
| All Indica | 492 | 91.30% | 0.00% | 7.11% | 0.00% | NA; AA: 1.80% |
| All Japonica | 244 | 97.10% | 0.00% | 2.05% | 0.00% | NA; AA: 0.40% |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 91.30% | 0.00% | 7.11% | 0.00% | NA; AA: 1.80% |
| Indica II | 215 | 92.60% | 0.00% | 6.98% | 0.00% | NA; AA: 0.50% |
| Indica III | 21 | 85.70% | 0.00% | 9.52% | 0.00% | NA; AA: 5.30% |
| Indica Intermediate | 190 | 91.60% | 0.00% | 7.89% | 0.00% | NA; AA: 0.60% |
| Temperate Japonica | 189 | 96.80% | 0.00% | 2.12% | 0.00% | NA; AA: 0.50% |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 11.10% | 88.90% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 90.00% | 0.00% | 8.23% | 0.00% | NA; AA: 1.90% |