GAAGCTCGAGGAGGAGGTGGTCTGGTCTGGTGGTGTTCGCGTCCGCGCAACCCTGGTTTGTTCTGTGGAAGGCGAGGTTAGCTAACTATGGTTAGTTCAA[TT/TTT,TTTT]
TTTTAGCTTTTTTGCGTACAAGTCCCTCGAATTAATGAGTAATTGTTTACAGTCCAGTTCCCTTTGCTAGTTAAACACGTCTTCGAATTATGTGTGAATA
TATTCACACATAATTCGAAGACGTGTTTAACTAGCAAAGGGAACTGGACTGTAAACAATTACTCATTAATTCGAGGGACTTGTACGCAAAAAAGCTAAAA[AA/AAA,AAAA]
TTGAACTAACCATAGTTAGCTAACCTCGCCTTCCACAGAACAAACCAGGGTTGCGCGGACGCGAACACCACCAGACCAGACCACCTCCTCCTCGAGCTTC
| Populations | Population Size | Frequency of TTT(primary allele) | Frequency of TTTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 62.50% | 2.00% | 4.01% | 0.00% | NA |
| All Indica | 492 | 93.10% | 0.00% | 2.85% | 0.00% | NA; TT: 1.30% |
| All Japonica | 244 | 1.30% | 0.00% | 6.15% | 0.00% | NA; TTT: 92.60% |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 93.10% | 0.00% | 2.85% | 0.00% | NA; TT: 1.30% |
| Indica II | 215 | 94.00% | 0.00% | 2.33% | 0.00% | NA; TT: 0.50% |
| Indica III | 21 | 66.70% | 0.00% | 4.76% | 0.00% | NA; TT: 5.00% |
| Indica Intermediate | 190 | 91.60% | 2.20% | 3.68% | 0.00% | NA |
| Temperate Japonica | 189 | 0.00% | 0.00% | 6.35% | 0.00% | NA; TT: 0.00%; TT: 93.70% |
| Tropical Japonica | 36 | 6.10% | 0.00% | 8.33% | 0.00% | NA; TTT: 86.10% |
| Japonica Intermediate | 19 | 5.30% | 0.00% | 0.00% | 0.00% | NA; TTT: 94.70% |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 78.80% | 2.30% | 3.90% | 0.00% | NA |