CAATCTTGTTGGCATCTGGTAAAATTCAATATCAAACCAAGAACAATCCTGTGAAATATAAGCACTAATCAATTGCTAGAACTAATTTTCCCCTACTCAT[AGAGAGAG/AGAGAG]
GAATTTGGCTTAAAGATCCGTACTATGTAAAGAGGAGTATTGAAGTGAACACCACTAAATAAAAAGAAGTTTAAGGTAAAAGGAATATTTCTTCAATTTT
AAAATTGAAGAAATATTCCTTTTACCTTAAACTTCTTTTTATTTAGTGGTGTTCACTTCAATACTCCTCTTTACATAGTACGGATCTTTAAGCCAAATTC[CTCTCTCT/CTCTCT]
ATGAGTAGGGGAAAATTAGTTCTAGCAATTGATTAGTGCTTATATTTCACAGGATTGTTCTTGGTTTGATATTGAATTTTACCAGATGCCAACAAGATTG
| Populations | Population Size | Frequency of AGAGAGAG(primary allele) | Frequency of AGAGAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 95.10% | 0.50% | 4.39% | 0.00% | NA |
| All Indica | 492 | 93.50% | 0.00% | 6.50% | 0.00% | NA |
| All Japonica | 244 | 98.00% | 1.60% | 0.41% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 93.50% | 0.00% | 6.50% | 0.00% | NA |
| Indica II | 215 | 96.70% | 0.00% | 3.26% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 89.50% | 0.00% | 10.53% | 0.00% | NA |
| Temperate Japonica | 189 | 98.40% | 1.60% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 89.50% | 5.60% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 90.50% | 0.50% | 9.09% | 0.00% | NA |