CGAGCGGCGCCGCCCACCACCGCATCCTCATCCCACAGATTCGCCCTCCTCTCTCCTCAACCAAAGAAACCCAACACAATTCCACCCCCACACCAGCAGA[GCAGCTG/G]
CAGCTGCAGCAACACACAACTCCTCACCAAACCATCTCCCCACCTCACCAACCCAACCCAACCCAATCCAAGAACACAAACGACGACGAGATGACGAAGC
GCTTCGTCATCTCGTCGTCGTTTGTGTTCTTGGATTGGGTTGGGTTGGGTTGGTGAGGTGGGGAGATGGTTTGGTGAGGAGTTGTGTGTTGCTGCAGCTG[CAGCTGC/C]
TCTGCTGGTGTGGGGGTGGAATTGTGTTGGGTTTCTTTGGTTGAGGAGAGAGGAGGGCGAATCTGTGGGATGAGGATGCGGTGGTGGGCGGCGCCGCTCG
| Populations | Population Size | Frequency of G(primary allele) | Frequency of GCAGCTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 72.00% | 25.90% | 2.84% | 0.00% | NA |
| All Indica | 492 | 99.00% | 0.40% | 0.61% | 0.00% | NA |
| All Japonica | 244 | 19.60% | 75.80% | 5.74% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 99.00% | 0.40% | 0.61% | 0.00% | NA |
| Indica II | 215 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 97.40% | 1.10% | 1.58% | 0.00% | NA |
| Temperate Japonica | 189 | 10.20% | 84.10% | 6.35% | 0.00% | NA |
| Tropical Japonica | 36 | 66.70% | 31.40% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 16.70% | 78.90% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 37.50% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 87.00% | 9.90% | 3.46% | 0.00% | NA |