ATAATACCAAAAATGCAAGGATAAGACAGTAGCCTACAGCATGCAAATAGAGCATTAAGTGAGAATTCAACTGTTCAAAGGGGTAGGGGATAAGATGAAT[TTACTTACTTG/TTACTGACTTG]
AAAGTTCTTGAAGAAATCTTTGGCAATGGACCGCTCAAATTATTGAATGAAAGATCTCTGCAACACAAGACCAATTCAAGGTAACTATTAAGCATACCAA
TTGGTATGCTTAATAGTTACCTTGAATTGGTCTTGTGTTGCAGAGATCTTTCATTCAATAATTTGAGCGGTCCATTGCCAAAGATTTCTTCAAGAACTTT[CAAGTAAGTAA/CAAGTCAGTAA]
ATTCATCTTATCCCCTACCCCTTTGAACAGTTGAATTCTCACTTAATGCTCTATTTGCATGCTGTAGGCTACTGTCTTATCCTTGCATTTTTGGTATTAT
| Populations | Population Size | Frequency of TTACTGACTTG(primary allele) | Frequency of TTACTTACTTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 48.20% | 46.80% | 9.43% | 0.00% | NA |
| All Indica | 492 | 71.50% | 20.00% | 10.57% | 0.00% | NA |
| All Japonica | 244 | 5.70% | 88.90% | 5.74% | 0.00% | NA |
| Aus | 7 | 0.00% | 85.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 71.50% | 20.00% | 10.57% | 0.00% | NA |
| Indica II | 215 | 90.20% | 4.00% | 6.05% | 0.00% | NA |
| Indica III | 21 | 81.00% | 10.50% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 71.10% | 18.70% | 12.63% | 0.00% | NA |
| Temperate Japonica | 189 | 6.10% | 88.90% | 5.29% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 94.40% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 11.80% | 78.90% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 62.80% | 27.10% | 13.85% | 0.00% | NA |