CAACGAGCAAGAACTAAGAAGGCGATTACACAAGTACTCACAAAGGAATACATGAAACCGGCCGACTCAGCCACTCGGACTCCCAACGGGTACGACACAC[CAGC/CAGT]
AGCAGACCATACTTGCACGACCAAACAAACACACACTGAAATACTGAATTACTGACACCAAACATGACTTCTTCCCTCACCGATCACATCTTCAGGAGCT
AGCTCCTGAAGATGTGATCGGTGAGGGAAGAAGTCATGTTTGGTGTCAGTAATTCAGTATTTCAGTGTGTGTTTGTTTGGTCGTGCAAGTATGGTCTGCT[GCTG/ACTG]
GTGTGTCGTACCCGTTGGGAGTCCGAGTGGCTGAGTCGGCCGGTTTCATGTATTCCTTTGTGAGTACTTGTGTAATCGCCTTCTTAGTTCTTGCTCGTTG
| Populations | Population Size | Frequency of CAGC(primary allele) | Frequency of CAGT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 95.30% | 3.70% | 1.03% | 0.00% | NA |
| All Indica | 492 | 99.20% | 0.00% | 0.81% | 0.00% | NA |
| All Japonica | 244 | 91.40% | 7.50% | 1.23% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 99.20% | 0.00% | 0.81% | 0.00% | NA |
| Indica II | 215 | 99.10% | 0.00% | 0.93% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 98.90% | 0.00% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 92.60% | 5.90% | 1.59% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 2.80% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 68.40% | 31.60% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 33.30% | 66.70% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 94.80% | 3.90% | 1.30% | 0.00% | NA |