ACAACACCATTGTACTGCTAATGAAAAGGACCCGAAAGCAAAAGTAACTTAAGTAACAAAAGACTCCTACAATTAGAAAATCTAAAAGTTAAGTAAGCAT[ACAACACAAC/ACAACACAA]
TAATCTTACATGTTCTGATGATAATCATGATTCTGCTGTCTTGAGTACAGAAGACTGCAGTTGATGATACTGTGCTGAGCTTTTGCACAATCAGATATAC
GTATATCTGATTGTGCAAAAGCTCAGCACAGTATCATCAACTGCAGTCTTCTGTACTCAAGACAGCAGAATCATGATTATCATCAGAACATGTAAGATTA[GTTGTGTTGT/TTGTGTTGT]
ATGCTTACTTAACTTTTAGATTTTCTAATTGTAGGAGTCTTTTGTTACTTAAGTTACTTTTGCTTTCGGGTCCTTTTCATTAGCAGTACAATGGTGTTGT
| Populations | Population Size | Frequency of ACAACACAAC(primary allele) | Frequency of ACAACACAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 60.60% | 34.00% | 8.14% | 0.00% | NA |
| All Indica | 492 | 53.00% | 41.50% | 9.35% | 0.00% | NA |
| All Japonica | 244 | 74.60% | 21.20% | 5.33% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 53.00% | 41.50% | 9.35% | 0.00% | NA |
| Indica II | 215 | 29.80% | 61.40% | 12.56% | 0.00% | NA |
| Indica III | 21 | 81.00% | 10.50% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 62.60% | 30.80% | 9.47% | 0.00% | NA |
| Temperate Japonica | 189 | 77.20% | 18.90% | 4.76% | 0.00% | NA |
| Tropical Japonica | 36 | 66.70% | 29.40% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 63.20% | 29.40% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 61.90% | 30.90% | 10.39% | 0.00% | NA |