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Detailed information for vg1227225397:

Variant ID: vg1227225397 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 27225397
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 272. )

Flanking Sequence (100 bp) in Reference Genome:

AGCGGCCCAACAGCTTGTACCAACCGAGTGTGTGGACCTAGTAGAATTGGGCTGGGCCACAGTGAGGGAGAGAGGTCCATAGCTCATCGCTATAAGAGAC[C/T]
GGCAGGGAAGAGAACGAATCGAACATTGTAGAAACAAATATTTGGAAATCAATTCAAATCTCTCCCTGTTCTATTGCTGCCTCTACCTGTTCTTAGCTGT

Reverse complement sequence

ACAGCTAAGAACAGGTAGAGGCAGCAATAGAACAGGGAGAGATTTGAATTGATTTCCAAATATTTGTTTCTACAATGTTCGATTCGTTCTCTTCCCTGCC[G/A]
GTCTCTTATAGCGATGAGCTATGGACCTCTCTCCCTCACTGTGGCCCAGCCCAATTCTACTAGGTCCACACACTCGGTTGGTACAAGCTGTTGGGCCGCT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: