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Detailed information for vg1210113739:

Variant ID: vg1210113739 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 10113739
Reference Allele: C	Alternative Allele: A
Primary Allele: C	Secondary Allele: A

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 322. )

Flanking Sequence (100 bp) in Reference Genome:

ATATCTAATAATCTAAGCACCCTGCTTACATTATCAAATACTACTCTATACCCTCGAGAATAATATAGAGCAATCATTCGTATGAACATTAAACCCACAC[C/A]
ACTGCACCTCTCTGGTAGGCTAGTCACACAAATATATCAGCACAAATATAAATGAAAGCCAGTACTGAGACAAAGTAAAGTACTGAAAGTATATAAAGAA

Reverse complement sequence

TTCTTTATATACTTTCAGTACTTTACTTTGTCTCAGTACTGGCTTTCATTTATATTTGTGCTGATATATTTGTGTGACTAGCCTACCAGAGAGGTGCAGT[G/T]
GTGTGGGTTTAATGTTCATACGAATGATTGCTCTATATTATTCTCGAGGGTATAGAGTAGTATTTGATAATGTAAGCAGGGTGCTTAGATTATTAGATAT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: