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Detailed information for vg1203971725:

Variant ID: vg1203971725 (JBrowse)	Variation Type: SNP
Chromosome: chr12	Position: 3971725
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, others allele: 0.00, population size: 286. )

Flanking Sequence (100 bp) in Reference Genome:

AAAAGTATTTACAAGATCACCAAAATGGTGAAAGAGAGAGAGAGGGGAGAGAAAGAAGCTACTACTAAAACAATGAAAATGTTCTAGGCAGATAATCTCG[T/C]
GATATTTGTTGTTCCACATATCTTCCATAGCTTGATTTCGTCCTGTATATTGTCTAGCAGCCGCGGCAGGGATTTTTCCTGATTCTGAAATGCTCATTTG

Reverse complement sequence

CAAATGAGCATTTCAGAATCAGGAAAAATCCCTGCCGCGGCTGCTAGACAATATACAGGACGAAATCAAGCTATGGAAGATATGTGGAACAACAAATATC[A/G]
CGAGATTATCTGCCTAGAACATTTTCATTGTTTTAGTAGTAGCTTCTTTCTCTCCCCTCTCTCTCTCTTTCACCATTTTGGTGATCTTGTAAATACTTTT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: