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Detailed information for vg1125635728:

Variant ID: vg1125635728 (JBrowse)Variation Type: SNP
Chromosome: chr11Position: 25635728
Reference Allele: CAlternative Allele: T
Primary Allele: CSecondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, T: 0.00, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:


TGCTCAAGCTTACAAGCAAGAGGGTGAATAAAGATGCAAACCAGATTTTCCGTGACATCTTGGACAAGTGTTATCCAAGCGAATTCTGCATGAAGATCTT[C/T]
GCTCACGCCCTCTACGCCAATCCCAACAGAAGCAAACAAGATCTACGCAAGTTGCTTGATTCCCTGGATTCAAAAAAATCACTAGGCATCAATGCTAAGA

Reverse complement sequence

TCTTAGCATTGATGCCTAGTGATTTTTTTGAATCCAGGGAATCAAGCAACTTGCGTAGATCTTGTTTGCTTCTGTTGGGATTGGCGTAGAGGGCGTGAGC[G/A]
AAGATCTTCATGCAGAATTCGCTTGGATAACACTTGTCCAAGATGTCACGGAAAATCTGGTTTGCATCTTTATTCACCCTCTTGCTTGTAAGCTTGAGCA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: