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Detailed information for vg1124179798:

Variant ID: vg1124179798 (JBrowse)	Variation Type: SNP
Chromosome: chr11	Position: 24179798
Reference Allele: T	Alternative Allele: C
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.89, C: 0.11, others allele: 0.00, population size: 92. )

Flanking Sequence (100 bp) in Reference Genome:

GAAATTTAATTTTGAAGTTGATTTGGATAATTTTTTTTCACCTATTATTTTTTAGCATTGACTTTTAAAGCATGAATAATAAATAGGAGTATATAAGACG[T/C]
TGTATTAAATTCTTTTTGACTTGGCTTGGTTTTACTACTTCTCATTAGCCTTATCTCCACGGGTCAGAACATTGATAGATCAAGGAAAACCTTGTCTGGA

Reverse complement sequence

TCCAGACAAGGTTTTCCTTGATCTATCAATGTTCTGACCCGTGGAGATAAGGCTAATGAGAAGTAGTAAAACCAAGCCAAGTCAAAAAGAATTTAATACA[A/G]
CGTCTTATATACTCCTATTTATTATTCATGCTTTAAAAGTCAATGCTAAAAAATAATAGGTGAAAAAAAATTATCCAAATCAACTTCAAAATTAAATTTC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: