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Detailed information for vg1017130116:

Variant ID: vg1017130116 (JBrowse)	Variation Type: SNP
Chromosome: chr10	Position: 17130116
Reference Allele: T	Alternative Allele: C
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.60, C: 0.41, others allele: 0.00, population size: 82. )

Flanking Sequence (100 bp) in Reference Genome:

ATTTGAATCCTTTCAAGTCAAGATTTGAAATCTTTTAAGTCAAAATTAAAAACTTTCAATTGTATATTTGTAAAGAGTTGTGCGAAAGATTGAAAAAAAT[T/C]
GGAAAGAAGCGGCACCTGCCCTTTTTTATCCAATGTGGAATCGACGACCTATGTATAAAAAAAGGAGAAAGTTTTTGAAGAAAAACACCACGCCAAAATC

Reverse complement sequence

GATTTTGGCGTGGTGTTTTTCTTCAAAAACTTTCTCCTTTTTTTATACATAGGTCGTCGATTCCACATTGGATAAAAAAGGGCAGGTGCCGCTTCTTTCC[A/G]
ATTTTTTTCAATCTTTCGCACAACTCTTTACAAATATACAATTGAAAGTTTTTAATTTTGACTTAAAAGATTTCAAATCTTGACTTGAAAGGATTCAAAT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: