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Detailed information for vg1013596120:

Variant ID: vg1013596120 (JBrowse)	Variation Type: SNP
Chromosome: chr10	Position: 13596120
Reference Allele: A	Alternative Allele: G
Primary Allele: A	Secondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 300. )

Flanking Sequence (100 bp) in Reference Genome:

TCATTGTTGCCTGCAGAAGTAACAAAATTGTTTCATATACATACACGAGAATACTATTGATTCCAATGCAAAATAACGGGGTCTAACCTCAGAACACACT[A/G]
ATATGCACAGTACAATCGACCATGCTTGCTGATTTGGCAAGATTCAGGAGAAAAACATGGAGAATTACAGTCATATATGAAGGTAAGTTCAAATAATACC

Reverse complement sequence

GGTATTATTTGAACTTACCTTCATATATGACTGTAATTCTCCATGTTTTTCTCCTGAATCTTGCCAAATCAGCAAGCATGGTCGATTGTACTGTGCATAT[T/C]
AGTGTGTTCTGAGGTTAGACCCCGTTATTTTGCATTGGAATCAATAGTATTCTCGTGTATGTATATGAAACAATTTTGTTACTTCTGCAGGCAACAATGA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: