Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0823019901:

Variant ID: vg0823019901 (JBrowse)	Variation Type: SNP
Chromosome: chr08	Position: 23019901
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, others allele: 0.00, population size: 268. )

Flanking Sequence (100 bp) in Reference Genome:

AAAAATAGATCAGATGTACTCCCTCCGTCCCATAAAAATGAATCTAGGACTGGATGTGATGCATTCTAGTAAGGTATGTTCAGATTCGTTGTAATAGAAT[G/A]
TGTCACATCCGATACTAGGTTGATTTTTATGGGATAGAGGGAGTAATGACTTATGATATATTGATTTGTTAGTTGTTTTTTTAAAAAATTTAACAGCAAA

Reverse complement sequence

TTTGCTGTTAAATTTTTTAAAAAAACAACTAACAAATCAATATATCATAAGTCATTACTCCCTCTATCCCATAAAAATCAACCTAGTATCGGATGTGACA[C/T]
ATTCTATTACAACGAATCTGAACATACCTTACTAGAATGCATCACATCCAGTCCTAGATTCATTTTTATGGGACGGAGGGAGTACATCTGATCTATTTTT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: