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Detailed information for vg0809615964:

Variant ID: vg0809615964 (JBrowse)	Variation Type: SNP
Chromosome: chr08	Position: 9615964
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.95, C: 0.05, others allele: 0.00, population size: 88. )

Flanking Sequence (100 bp) in Reference Genome:

TTTTTGCCTCCAAAACTTTTAGATTTGTGTCAATCGGATTGCCTCGATATTTGTGCATGAATGGAAAAAAATTGCTAGAAAGAAATTTTCATACATGTCA[T/C]
GCGTAAGATCCTGGTGCTATCCAACCAAATTATAGTTGAATACAAGTTTCATATAAGTTATATTAAGTTATATCGTAGTTATAATACAGTTATAGTGCAG

Reverse complement sequence

CTGCACTATAACTGTATTATAACTACGATATAACTTAATATAACTTATATGAAACTTGTATTCAACTATAATTTGGTTGGATAGCACCAGGATCTTACGC[A/G]
TGACATGTATGAAAATTTCTTTCTAGCAATTTTTTTCCATTCATGCACAAATATCGAGGCAATCCGATTGACACAAATCTAAAAGTTTTGGAGGCAAAAA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: