Search for Variation information by Variation ID:
Detailed information for vg0804877336:
| Variant ID: vg0804877336 (JBrowse) | Variation Type: SNP |
| Chromosome: chr08 | Position: 4877336 |
| Reference Allele: A | Alternative Allele: T |
| Primary Allele: A | Secondary Allele: T |
Inferred Ancestral Allele: Not determined.
Flanking Sequence (100 bp) in Reference Genome:
GCTTCATCTCATGAACCCCACTATAGAAATAACTGTGAAACTGCTTCTCTAAATCAGCCCAACTGTTAATCGACCCATGTGGCAGAGAAGAAAACCAAGT[A/T]
AAAGCCGACCCAGCTAATGACAACCGGAATAACCTAACCCTCAAAGCATCTACAGCCGATGCCTCACCACACTGAGCTAAGAATCGGCTGATGTGCTCAT
Reverse complement sequence
ATGAGCACATCAGCCGATTCTTAGCTCAGTGTGGTGAGGCATCGGCTGTAGATGCTTTGAGGGTTAGGTTATTCCGGTTGTCATTAGCTGGGTCGGCTTT[T/A]
ACTTGGTTTTCTTCTCTGCCACATGGGTCGATTAACAGTTGGGCTGATTTAGAGAAGCAGTTTCACAGTTATTTCTATAGTGGGGTTCATGAGATGAAGC
Allele Frequencies:
Allele Effect:
| Var ID | Var | Locus | snpEff Annotation | CooVar Annotation | Chromatin Accessibility Score | PolyPhen-2 Effect | PolyPhen-2 Score | SIFT Effect | SIFT Score |
|---|---|---|---|---|---|---|---|---|---|
| vg0804877336 | A -> T | LOC_Os08g08460.1 | missense_variant ; p.Phe502Leu; MODERATE | nonsynonymous_codon ; F502L | Average:33.408; most accessible tissue: Minghui63 flag leaf, score: 76.453 | benign  |
0.656 |
DELETERIOUS | 0.00 |
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