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Detailed information for vg0804590579:

Variant ID: vg0804590579 (JBrowse)	Variation Type: SNP
Chromosome: chr08	Position: 4590579
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 0.98, C: 0.02, others allele: 0.00, population size: 263. )

Flanking Sequence (100 bp) in Reference Genome:

AAGCTGTTTGTTACGGTCTCTTTTTTTATCTTATTGAATAGACCCAGCAGAATGTCCATTATCCAATTTCAAGCAAGATATATTTTTCTCTACCCTAATA[T/C]
TCAAAACCAGAGGGTTGTGTCTGCAAACGATTGGGTGGACCTGGTTTTATAATAGGGGGGAAGGCTGCGCAAGGGAATAGAAACTTGAAACATGTTCACG

Reverse complement sequence

CGTGAACATGTTTCAAGTTTCTATTCCCTTGCGCAGCCTTCCCCCCTATTATAAAACCAGGTCCACCCAATCGTTTGCAGACACAACCCTCTGGTTTTGA[A/G]
TATTAGGGTAGAGAAAAATATATCTTGCTTGAAATTGGATAATGGACATTCTGCTGGGTCTATTCAATAAGATAAAAAAAGAGACCGTAACAAACAGCTT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: