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Detailed information for vg0802736687:

Variant ID: vg0802736687 (JBrowse)	Variation Type: SNP
Chromosome: chr08	Position: 2736687
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.00, others allele: 0.00, population size: 116. )

Flanking Sequence (100 bp) in Reference Genome:

CCAAATTTGGTAACATCGGCATCGGAAAAGAAGATTAGATCAAAGTGGAATCGGAGGCGGAGATCAATTCGGGAACAGAGCAGGAATCGGCTAGAGTCCA[G/A]
ATCGGCTACGATTAGGATCGGCTGAGTATGAGTCGGACTAGGTAGGCTGATGCAGCCGATTCCGACAATACAACTTGGTGTGTGACATCGGGTTGAATTG

Reverse complement sequence

CAATTCAACCCGATGTCACACACCAAGTTGTATTGTCGGAATCGGCTGCATCAGCCTACCTAGTCCGACTCATACTCAGCCGATCCTAATCGTAGCCGAT[C/T]
TGGACTCTAGCCGATTCCTGCTCTGTTCCCGAATTGATCTCCGCCTCCGATTCCACTTTGATCTAATCTTCTTTTCCGATGCCGATGTTACCAAATTTGG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: