\
| Variant ID: vg0719227901 (JBrowse) | Variation Type: INDEL |
| Chromosome: chr07 | Position: 19227901 |
| Reference Allele: GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA | Alternative Allele: TCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA,G |
| Primary Allele: TCTCCAGTTCAATAAAAAGT ACCTCATGGTACTAA | Secondary Allele: GCTCCAGTTCAATAAAAAGT ACCTCATGGTACTAA |
Inferred Ancestral Allele: Not determined.
GAAGCCGAATGCAGAAGGCTGCAGGTAATGCCATTTCCTCTTTTTTCCCCCAACAGCTCTGCATTTTGGACAGTTCCCGTTCTTTTCTGATCAGAAATTC[GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA/TCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA,G]
ATCGTTTTCGATCGTTGGATCTAACAATGTCCACCCTACCTAGCTAGATTTAACGATCGAAAATGATTTAGTACCGCGAGGAACCATGCACCAGGACCGA
TCGGTCCTGGTGCATGGTTCCTCGCGGTACTAAATCATTTTCGATCGTTAAATCTAGCTAGGTAGGGTGGACATTGTTAGATCCAACGATCGAAAACGAT[TTAGTACCATGAGGTACTTTTTATTGAACTGGAGC/TTAGTACCATGAGGTACTTTTTATTGAACTGGAGA,C]
GAATTTCTGATCAGAAAAGAACGGGAACTGTCCAAAATGCAGAGCTGTTGGGGGAAAAAAGAGGAAATGGCATTACCTGCAGCCTTCTGCATTCGGCTTC
| Populations | Population Size | Frequency of TCTCCAGTTCAATAAAAAGT ACCTCATGGTACTAA(primary allele) | Frequency of GCTCCAGTTCAATAAAAAGT ACCTCATGGTACTAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 4726 | 73.50% | 26.40% | 0.02% | 0.11% | G: 0.04% |
| All Indica | 2759 | 94.10% | 5.80% | 0.00% | 0.14% | NA |
| All Japonica | 1512 | 30.60% | 69.40% | 0.00% | 0.07% | NA |
| Aus | 269 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 595 | 97.60% | 2.40% | 0.00% | 0.00% | NA |
| Indica II | 465 | 92.90% | 6.70% | 0.00% | 0.43% | NA |
| Indica III | 913 | 96.70% | 3.30% | 0.00% | 0.00% | NA |
| Indica Intermediate | 786 | 88.90% | 10.80% | 0.00% | 0.25% | NA |
| Temperate Japonica | 767 | 3.40% | 96.60% | 0.00% | 0.00% | NA |
| Tropical Japonica | 504 | 69.00% | 30.80% | 0.00% | 0.20% | NA |
| Japonica Intermediate | 241 | 36.50% | 63.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 96 | 86.50% | 13.50% | 0.00% | 0.00% | NA |
| Intermediate | 90 | 70.00% | 26.70% | 1.11% | 0.00% | G: 2.22% |
| Var ID | Var | Locus | snpEff Annotation | CooVar Annotation | Chromatin Accessibility Score | PolyPhen-2 Effect | PolyPhen-2 Score | SIFT Effect | SIFT Score |
|---|---|---|---|---|---|---|---|---|---|
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> DEL | N | N | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> G | LOC_Os07g32350.1 | downstream_gene_variant ; 3746.0bp to feature; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> G | LOC_Os07g32350.2 | downstream_gene_variant ; 3746.0bp to feature; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> G | LOC_Os07g32340.1 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> G | LOC_Os07g32340.2 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> G | LOC_Os07g32340.3 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> TCTCCAGTTCAATAAAAAGTACCTCATGGT ACTAA | LOC_Os07g32350.1 | downstream_gene_variant ; 3747.0bp to feature; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> TCTCCAGTTCAATAAAAAGTACCTCATGGT ACTAA | LOC_Os07g32350.2 | downstream_gene_variant ; 3747.0bp to feature; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> TCTCCAGTTCAATAAAAAGTACCTCATGGT ACTAA | LOC_Os07g32340.1 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> TCTCCAGTTCAATAAAAAGTACCTCATGGT ACTAA | LOC_Os07g32340.2 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| vg0719227901 | GCTCCAGTTCAATAAAAAGTACCTCATGGTACTAA -> TCTCCAGTTCAATAAAAAGTACCTCATGGT ACTAA | LOC_Os07g32340.3 | intron_variant ; MODIFIER | silent_mutation | Average:72.696; most accessible tissue: Zhenshan97 panicle, score: 85.665 | N | N | N | N |
| Var ID | LMM P-value | LR P-value | Trait | Subpopulation | Is leadSNP | Publication |
|---|---|---|---|---|---|---|
| vg0719227901 | 4.10E-08 | NA | mr1085 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.26E-11 | 7.29E-32 | mr1086 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.70E-06 | 7.58E-08 | mr1086 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.27E-11 | NA | mr1088 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 8.75E-08 | mr1088 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 8.95E-06 | 1.07E-07 | mr1088 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.40E-10 | NA | mr1103 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 6.37E-09 | 7.15E-34 | mr1104 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 1.63E-06 | mr1104 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 9.50E-12 | 7.33E-30 | mr1107 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 5.52E-06 | mr1107 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.04E-08 | NA | mr1139 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 5.07E-22 | mr1155 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 6.10E-06 | NA | mr1204 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.32E-06 | 3.78E-07 | mr1212 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.29E-17 | 1.10E-48 | mr1213 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.22E-08 | 2.67E-09 | mr1213 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.58E-08 | 8.35E-14 | mr1213 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.16E-11 | NA | mr1224 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 3.42E-06 | mr1224 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.29E-07 | 2.63E-10 | mr1224 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 6.46E-09 | NA | mr1225 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 2.04E-06 | mr1225 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 2.91E-07 | mr1225 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.24E-06 | NA | mr1226 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 5.44E-06 | mr1227 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.62E-10 | 6.14E-16 | mr1233 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.31E-11 | NA | mr1246 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 2.91E-06 | mr1246 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.66E-08 | 6.62E-10 | mr1246 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 6.77E-07 | NA | mr1264 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 8.56E-12 | 2.53E-38 | mr1404 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 2.71E-06 | mr1404 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.63E-07 | 1.51E-11 | mr1404 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 9.88E-09 | NA | mr1437 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 8.55E-06 | mr1589 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 2.31E-07 | mr1599 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.27E-12 | 4.88E-41 | mr1620 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 8.91E-08 | 7.20E-11 | mr1620 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 3.35E-17 | mr1768 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 5.81E-07 | mr1768 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 8.60E-10 | mr1790 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 8.88E-08 | mr1804 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.62E-07 | NA | mr1878 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 7.82E-06 | mr1911 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.24E-07 | 3.31E-14 | mr1949 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 3.29E-30 | mr1980 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 5.31E-09 | NA | mr1070_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.83E-07 | NA | mr1085_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.15E-14 | NA | mr1088_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.06E-06 | 4.14E-07 | mr1088_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.16E-07 | 9.37E-09 | mr1088_2 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.51E-11 | NA | mr1103_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.34E-06 | NA | mr1103_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.63E-08 | NA | mr1104_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.27E-06 | NA | mr1104_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.77E-07 | NA | mr1107_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 5.14E-07 | NA | mr1107_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.26E-06 | 1.08E-06 | mr1131_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.20E-07 | NA | mr1145_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 7.29E-06 | NA | mr1155_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 7.21E-06 | NA | mr1155_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 1.17E-08 | mr1212_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | NA | 3.85E-14 | mr1216_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.12E-15 | 6.47E-43 | mr1224_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.82E-07 | 4.19E-07 | mr1224_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.00E-08 | 3.91E-11 | mr1224_2 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.73E-07 | NA | mr1226_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 8.77E-06 | NA | mr1226_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 5.27E-12 | 2.44E-28 | mr1233_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.75E-06 | NA | mr1241_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.96E-13 | NA | mr1246_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.24E-06 | 1.60E-06 | mr1246_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.11E-07 | 1.49E-11 | mr1246_2 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 5.07E-06 | NA | mr1264_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.34E-19 | 1.73E-65 | mr1404_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.82E-08 | 2.95E-09 | mr1404_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 7.41E-10 | 2.50E-13 | mr1404_2 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 7.53E-11 | NA | mr1437_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 8.46E-16 | 1.91E-55 | mr1620_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.70E-07 | 1.30E-07 | mr1620_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 4.06E-07 | 1.32E-08 | mr1620_2 | Jap_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.33E-06 | 7.03E-08 | mr1676_2 | Ind_All | YES | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 2.57E-07 | NA | mr1878_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 1.40E-11 | 4.36E-25 | mr1949_2 | All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |
| vg0719227901 | 3.81E-06 | NA | mr1949_2 | Ind_All | Not | Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism, Nat Genet, 46(7):714-21, PMID:24908251 |