Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Detailed information for vg0714562076:

Variant ID: vg0714562076 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 14562076
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.92, T: 0.07, others allele: 0.00, population size: 213. )

Flanking Sequence (100 bp) in Reference Genome:

CACAAAGACTCGGGTTGCTCTAATAGCCAACAAACAGGAGGATGTGCACACCTAGCAAAAGACCTTTTGGGAAACAGGGACTTATTCCAAGTACCTGTCA[C/T]
ATCGGATGTTCGGACACTAATTTGAAGTATTAAACATACACTAATTACAAAACCCATTCCATATCCTTGACTAATTCGCGAGACGAATCTTTTGAGTCTA

Reverse complement sequence

TAGACTCAAAAGATTCGTCTCGCGAATTAGTCAAGGATATGGAATGGGTTTTGTAATTAGTGTATGTTTAATACTTCAAATTAGTGTCCGAACATCCGAT[G/A]
TGACAGGTACTTGGAATAAGTCCCTGTTTCCCAAAAGGTCTTTTGCTAGGTGTGCACATCCTCCTGTTTGTTGGCTATTAGAGCAACCCGAGTCTTTGTG

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: