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Detailed information for vg0709235829:

Variant ID: vg0709235829 (JBrowse)	Variation Type: SNP
Chromosome: chr07	Position: 9235829
Reference Allele: C	Alternative Allele: T
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, T: 0.01, others allele: 0.00, population size: 124. )

Flanking Sequence (100 bp) in Reference Genome:

GATATCTCTCCATAGGAGGGGCAAATCCCATCTTGATTATTCATATCCCACTACATGTTTCATAGCATACCCAAAAACTACTTTTATAGCTACCCATTTA[C/T]
GGAGTAGCATTTAGCAGTCCCTAAGTAAGCTACTACATATGTTGAGAACCATGATAATCTCAGGTCTAAGGATTCAACACCAACACTAAATGAGATCACT

Reverse complement sequence

AGTGATCTCATTTAGTGTTGGTGTTGAATCCTTAGACCTGAGATTATCATGGTTCTCAACATATGTAGTAGCTTACTTAGGGACTGCTAAATGCTACTCC[G/A]
TAAATGGGTAGCTATAAAAGTAGTTTTTGGGTATGCTATGAAACATGTAGTGGGATATGAATAATCAAGATGGGATTTGCCCCTCCTATGGAGAGATATC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: