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Detailed information for vg0609662391:

Variant ID: vg0609662391 (JBrowse)	Variation Type: SNP
Chromosome: chr06	Position: 9662391
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.99, others allele: 0.00, population size: 268. )

Flanking Sequence (100 bp) in Reference Genome:

ATTTGCTTTTTTCTATCAGTGAGACAAGTCAAATGATTTGGTTCTTTTTTTTTATATTGAATCAGAATCGTGCGCTCTCTCTCGTGAACGGAACATATAC[G/A]
CGGAGTACGTCCGACTGACTCATGGATGGCATCATTAAGCAATGGAGGATGGAATCATGTTGAAATTTTTAAGTAGGTTAAGATTAATATTAGATCTAAT

Reverse complement sequence

ATTAGATCTAATATTAATCTTAACCTACTTAAAAATTTCAACATGATTCCATCCTCCATTGCTTAATGATGCCATCCATGAGTCAGTCGGACGTACTCCG[C/T]
GTATATGTTCCGTTCACGAGAGAGAGCGCACGATTCTGATTCAATATAAAAAAAAAGAACCAAATCATTTGACTTGTCTCACTGATAGAAAAAAGCAAAT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: