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Detailed information for vg0604141656:

Variant ID: vg0604141656 (JBrowse)	Variation Type: SNP
Chromosome: chr06	Position: 4141656
Reference Allele: A	Alternative Allele: G
Primary Allele: A	Secondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.00, others allele: 0.00, population size: 327. )

Flanking Sequence (100 bp) in Reference Genome:

GATGGACAGAAACAAGATCATATACAGAGCTCAAACATTATATGGAGTTCAATGCCAAGCACTCAACTGCCAAGTGATACCCAAATTCATAATACTCAAA[A/G]
CCAAAGATTGGACAGCGGAAGTTTTAACCATAATATTGGTGCCCATTTGGCTGACCAAACAAATGCAAGTGCGTCAATACTTCCGCAAATGAAGTTTGAC

Reverse complement sequence

GTCAAACTTCATTTGCGGAAGTATTGACGCACTTGCATTTGTTTGGTCAGCCAAATGGGCACCAATATTATGGTTAAAACTTCCGCTGTCCAATCTTTGG[T/C]
TTTGAGTATTATGAATTTGGGTATCACTTGGCAGTTGAGTGCTTGGCATTGAACTCCATATAATGTTTGAGCTCTGTATATGATCTTGTTTCTGTCCATC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: