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Detailed information for vg0526967577:

Variant ID: vg0526967577 (JBrowse)	Variation Type: SNP
Chromosome: chr05	Position: 26967577
Reference Allele: T	Alternative Allele: C
Primary Allele: C	Secondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 300. )

Flanking Sequence (100 bp) in Reference Genome:

ATAATCGTCCTGTAAGAAAATATTCGTATTAATTGAAAGTAGAATAATACTCGTGGCAGTCAAATTCCTCCTGTTGTTATGTGGCAGAAATAGGAGTTAC[T/C]
TGGACTTGAAAGTATATTCCCATCTTAACAAGAATGTCTTCTACAGCACCATATTTGGTCAAGTCCTCTCCAGATAGCAACAGTGCACAAGCAACCTTTG

Reverse complement sequence

CAAAGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCA[A/G]
GTAACTCCTATTTCTGCCACATAACAACAGGAGGAATTTGACTGCCACGAGTATTATTCTACTTTCAATTAATACGAATATTTTCTTACAGGACGATTAT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: