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Detailed information for vg0526725308:

Variant ID: vg0526725308 (JBrowse)	Variation Type: SNP
Chromosome: chr05	Position: 26725308
Reference Allele: G	Alternative Allele: C
Primary Allele: C	Secondary Allele: G

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 0.98, C: 0.02, others allele: 0.00, population size: 107. )

Flanking Sequence (100 bp) in Reference Genome:

TCTTGGCATCATGGCTCCCCCGATTAGCTAGTTACTCAGCCAGGGGTGTCCTATTCCACCCATGTGGTCGCACTTGTCTTATGTTCGGATGAAATTCCAA[G/C]
GAAATGGTCCTTAAGTGCAAGAGCGGGAAACCGTACACCCGGTACGTTCCCCGGTCCACGATTTTGGAAATTCATTTAGTTCGCAAGCACCGACCCAGGT

Reverse complement sequence

ACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAATCGTGGACCGGGGAACGTACCGGGTGTACGGTTTCCCGCTCTTGCACTTAAGGACCATTTC[C/G]
TTGGAATTTCATCCGAACATAAGACAAGTGCGACCACATGGGTGGAATAGGACACCCCTGGCTGAGTAACTAGCTAATCGGGGGAGCCATGATGCCAAGA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: