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Detailed information for vg0503179544:

Variant ID: vg0503179544 (JBrowse)	Variation Type: SNP
Chromosome: chr05	Position: 3179544
Reference Allele: G	Alternative Allele: A
Primary Allele: G	Secondary Allele: A

Inferred Ancestral Allele : G (evidence from allele frequency in Oryza rufipogon: G: 1.01, others allele: 0.00, population size: 318. )

Flanking Sequence (100 bp) in Reference Genome:

GGTCCAGGGTTCACTGCTCTAGCGGCTGCATCAACTCCCTCGTCGCCGAGGTAAATTTTATTTATTTATTGAGTTGAATGCGTGCACCAACTAATTCAAC[G/A]
TAAAGCTTAAACCTGACGAGCGATTCACTTATAATGCAATGATATTTAAGGGTAACTAATAAGGGACGGGATCCCATCAAAACATTTAAGGGACAATGAA

Reverse complement sequence

TTCATTGTCCCTTAAATGTTTTGATGGGATCCCGTCCCTTATTAGTTACCCTTAAATATCATTGCATTATAAGTGAATCGCTCGTCAGGTTTAAGCTTTA[C/T]
GTTGAATTAGTTGGTGCACGCATTCAACTCAATAAATAAATAAAATTTACCTCGGCGACGAGGGAGTTGATGCAGCCGCTAGAGCAGTGAACCCTGGACC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: