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Detailed information for vg0500304693:

Variant ID: vg0500304693 (JBrowse)	Variation Type: SNP
Chromosome: chr05	Position: 304693
Reference Allele: A	Alternative Allele: C
Primary Allele: A	Secondary Allele: C

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 0.77, C: 0.23, others allele: 0.00, population size: 272. )

Flanking Sequence (100 bp) in Reference Genome:

GACTAACTTTTTTTCTCGAACGTACAGGAGAGCTGCGTGTCATTCCATTAAACAAACAGTACATCACAACCTACATTCCATTAAAACAGACACGCCACAG[A/C]
AGAAAAAAGTGACCAAAGGACACTAGAGATCTAAACTATCCCGAGTTCCTGACCCATAAACTCTCAAGATCTTTAGCTCCAGTTGCCATCTACATCAGAA

Reverse complement sequence

TTCTGATGTAGATGGCAACTGGAGCTAAAGATCTTGAGAGTTTATGGGTCAGGAACTCGGGATAGTTTAGATCTCTAGTGTCCTTTGGTCACTTTTTTCT[T/G]
CTGTGGCGTGTCTGTTTTAATGGAATGTAGGTTGTGATGTACTGTTTGTTTAATGGAATGACACGCAGCTCTCCTGTACGTTCGAGAAAAAAAGTTAGTC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: