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Detailed information for vg0334698613:

Variant ID: vg0334698613 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 34698613
Reference Allele: T	Alternative Allele: C
Primary Allele: T	Secondary Allele: C

Inferred Ancestral Allele : T (evidence from allele frequency in Oryza rufipogon: T: 1.00, C: 0.01, others allele: 0.00, population size: 227. )

Flanking Sequence (100 bp) in Reference Genome:

AGGGAAAATAAAAAGGGACTGATTTGGGATACTGAATTCGGTTGAAAATTGATATATAATTGAATCGAAGAAATTAGTGTGACTACTCAATTAGCATCAA[T/C]
CAAGATGTATTATAAAAAGATTTAGCTGAATGGGGAAAGAACTTACGCTGGAACATCTGAGATCAGCAAGCAGTGGAAGTGGAACAACCCCTTTGTTGGC

Reverse complement sequence

GCCAACAAAGGGGTTGTTCCACTTCCACTGCTTGCTGATCTCAGATGTTCCAGCGTAAGTTCTTTCCCCATTCAGCTAAATCTTTTTATAATACATCTTG[A/G]
TTGATGCTAATTGAGTAGTCACACTAATTTCTTCGATTCAATTATATATCAATTTTCAACCGAATTCAGTATCCCAAATCAGTCCCTTTTTATTTTCCCT

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: