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Detailed information for vg0334524883:

Variant ID: vg0334524883 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 34524883
Reference Allele: C	Alternative Allele: G
Primary Allele: C	Secondary Allele: G

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 0.99, others allele: 0.00, population size: 309. )

Flanking Sequence (100 bp) in Reference Genome:

TTATTTTTATGTTTTGATTGCTAGGTCCTAACATAAATGTGAGCTCAGTAAATGAAATCAACTACAGTGATAATTTTGTGGTTAGTAAATTGCTTGTGCT[C/G]
TTCTTATCATCTGTCTATTTAATTTTCTGAAAGAGAAAGATGTCTATTTATTCAGTATTTGCTTGATTGCTTGCAAGATCTCTTCCAGCTTTTCTCTTTC

Reverse complement sequence

GAAAGAGAAAAGCTGGAAGAGATCTTGCAAGCAATCAAGCAAATACTGAATAAATAGACATCTTTCTCTTTCAGAAAATTAAATAGACAGATGATAAGAA[G/C]
AGCACAAGCAATTTACTAACCACAAAATTATCACTGTAGTTGATTTCATTTACTGAGCTCACATTTATGTTAGGACCTAGCAATCAAAACATAAAAATAA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: