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Detailed information for vg0328403714:

Variant ID: vg0328403714 (JBrowse)	Variation Type: SNP
Chromosome: chr03	Position: 28403714
Reference Allele: A	Alternative Allele: C
Primary Allele: C	Secondary Allele: A

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 281. )

Flanking Sequence (100 bp) in Reference Genome:

GTGAGAGATTTTGAGTTCGAATCCCACATATTATTTTTTATTTAGTATGTATCGTTATTACCAGTTCTTTTAATCAGTACTAAAGATCGAGATTTTTAGT[A/C]
TTAATTTACATCGTTCTCGGTTGTTACAACCAGTAATAAAGAGGGTTATTAACCGGTAATAAAAATGAGTTCTCCGGTAGTGTTTGAACCGTTGTGGATG

Reverse complement sequence

CATCCACAACGGTTCAAACACTACCGGAGAACTCATTTTTATTACCGGTTAATAACCCTCTTTATTACTGGTTGTAACAACCGAGAACGATGTAAATTAA[T/G]
ACTAAAAATCTCGATCTTTAGTACTGATTAAAAGAACTGGTAATAACGATACATACTAAATAAAAAATAATATGTGGGATTCGAACTCAAAATCTCTCAC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: