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Detailed information for vg0308122080:

Variant ID: vg0308122080 (JBrowse)Variation Type: SNP
Chromosome: chr03Position: 8122080
Reference Allele: AAlternative Allele: G
Primary Allele: ASecondary Allele: G

Inferred Ancestral Allele : A (evidence from allele frequency in Oryza rufipogon: A: 1.01, others allele: 0.00, population size: 90. )

Flanking Sequence (100 bp) in Reference Genome:


GAAAATTTGATTAAAATTAAAATGATGCGACAGAAAAGTTAGTAGTTTATGTGTGCAGGAAAGTTTTGATGTGATAGAAAAGTTGAAAGTTTGAAGAAAA[A/G]
GTTGAAATCTAAACCAGGCTTATGTGTAGAAAAGTTTTGATGTGATAAAAAAGTTGAAAGTTCGATGAAAAAGTTGGAAACTAAACCAGGCCTATATATA

Reverse complement sequence

TATATATAGGCCTGGTTTAGTTTCCAACTTTTTCATCGAACTTTCAACTTTTTTATCACATCAAAACTTTTCTACACATAAGCCTGGTTTAGATTTCAAC[T/C]
TTTTCTTCAAACTTTCAACTTTTCTATCACATCAAAACTTTCCTGCACACATAAACTACTAACTTTTCTGTCGCATCATTTTAATTTTAATCAAATTTTC

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: