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Detailed information for vg0306588571:

Variant ID: vg0306588571 (JBrowse)Variation Type: INDEL
Chromosome: chr03Position: 6588571
Reference Allele: CAlternative Allele: T,CT
Primary Allele: CSecondary Allele: T

Inferred Ancestral Allele : C (evidence from allele frequency in Oryza rufipogon: C: 1.00, others allele: 0.00, population size: 222. )

Flanking Sequence (100 bp) in Reference Genome:


TCATGGACTAATTAGGCTCAAGCAATTAGTTTTTGTTTTTATCTATATTTAATGCTTCATGCATATGTTTAAAGATTTGATGTGATGTTTTTGGGAAAAA[C/T,CT]
TTTTTGGAAACTAAACAGGGCCTTACTCCATTCATTTTTATGACAATCATTTTGGTGTCCTTAATTTCCACGAGCACGTCTTGTTTGTCCTGTTATGACA

Reverse complement sequence

TGTCATAACAGGACAAACAAGACGTGCTCGTGGAAATTAAGGACACCAAAATGATTGTCATAAAAATGAATGGAGTAAGGCCCTGTTTAGTTTCCAAAAA[G/A,AG]
TTTTTCCCAAAAACATCACATCAAATCTTTAAACATATGCATGAAGCATTAAATATAGATAAAAACAAAAACTAATTGCTTGAGCCTAATTAGTCCATGA

Allele Frequencies:

Allele Effect:

Putative Genotype-Phenotype Associations: